Transcript: lnc-PCM1-1:1

Basic information

LNCipedia transcript ID: lnc-PCM1-1:1 
LNCipedia gene ID: lnc-PCM1-1
Location (hg38): chr8:17905756-17916410
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1152 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000519038; ENST00000519038.1; RP11-156K13.3-001; OTTHUMT00000375568.1; NONHSAT125306
Alternative gene names: ENSG00000254054; RP11-156K13.3; ENSG00000254054.1; OTTHUMG00000163792.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.6407 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCM1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCM1-1:1
3.1 lnc-PCM1-1:1
4.0 lnc-PCM1-1:1
4.1 lnc-PCM1-1:1
5.0 lnc-PCM1-1:1
5.1 lnc-PCM1-1:1
5.2 lnc-PCM1-1:1