Transcript: lnc-PCNX1-1:3

Basic information

LNCipedia transcript ID: lnc-PCNX1-1:3 
LNCipedia gene ID: lnc-PCNX1-1
Ensembl Gene ID: ENSG00000259907
Ensembl Transcript ID: ENST00000561794
Location (hg38): chr14:71181456-71182106
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 651 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561794.1; RP6-91H8.2-001; OTTHUMT00000420371.1; NONHSAT037610
Alternative gene names: ENSG00000259907.1; RP6-91H8.2; OTTHUMG00000172756.1; AC004817.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.1934 non-coding 
CPAT coding probability 36.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCNX1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCNX-1:1
4.0 lnc-PCNX-1:1
4.1 lnc-PCNX-1:1
5.0 lnc-PCNX-1:1
5.1 lnc-ACOT2-34:3
5.2 lnc-PCNX1-1:3