Transcript: lnc-PCNX1-3:1

Basic information

LNCipedia transcript ID: lnc-PCNX1-3:1 
LNCipedia gene ID: lnc-PCNX1-3
Ensembl Gene ID: ENSG00000258517
Ensembl Transcript ID: ENST00000553621
Location (hg38): chr14:71212633-71218216
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 721 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553621; ENST00000553621.1; RP6-91H8.1-001; OTTHUMT00000412794.1; NONHSAT037612
Alternative gene names: ENSG00000258517; RP6-91H8.1; ENSG00000258517.1; OTTHUMG00000171281.1; AC004817.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.0732 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCNX1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCNX-1:1
3.1 lnc-PCNX-3:1
4.0 lnc-PCNX-3:1
4.1 lnc-PCNX-3:1
5.0 lnc-PCNX-3:1
5.1 lnc-ACOT2-33:1
5.2 lnc-PCNX1-3:1