Transcript: lnc-PCNX2-9:5

Basic information

LNCipedia transcript ID: lnc-PCNX2-9:5 
LNCipedia gene ID: lnc-PCNX2-9
Location (hg38): chr1:233707189-233707508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098493.1|FTMT20200012899.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.4868 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCNX2-9:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PCNXL2-9:1
5.0 lnc-PCNXL2-9:1
5.1 lnc-SIPA1L2-20:5
5.2 lnc-PCNX2-9:5