Transcript: lnc-PCSK9-1:1

Basic information

LNCipedia transcript ID: lnc-PCSK9-1:1 
LNCipedia gene ID: lnc-PCSK9-1
Location (hg38): chr1:55215408-55217451
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1794 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000499090; TCONS_00000205
Alternative gene names: ENSG00000244861; XLOC_000206; linc-PRKAA2-9; AC091609.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.3589 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCSK9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCSK9-1:1
3.1 lnc-PCSK9-1:1
4.0 lnc-PCSK9-1:1
4.1 lnc-PCSK9-1:1
5.0 lnc-PCSK9-1:1
5.1 lnc-MROH7-TTC4-9:1
5.2 lnc-PCSK9-1:1