Transcript: lnc-PDCD1-16:1

Basic information

LNCipedia transcript ID: lnc-PDCD1-16:1 
LNCipedia gene ID: lnc-PDCD1-16
Ensembl Gene ID: ENSG00000226423
Ensembl Transcript ID: ENST00000412193
Location (hg38): chr2:242025183-242026176
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412193; ENST00000412193.1; AC093642.4-001; OTTHUMT00000322411.1; NONHSAT078018
Alternative gene names: ENSG00000226423; AC093642.4; ENSG00000226423.1; OTTHUMG00000151372.1; AC093642.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.3726 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC131097.4.1-2:1
3.1 lnc-AC131097.4.1-2:1
4.0 lnc-AC131097.4.1-2:1
4.1 lnc-AC131097.4.1-2:1
5.0 lnc-AC131097.4.1-2:1
5.1 lnc-PDCD1-10:1
5.2 lnc-PDCD1-16:1