Transcript: lnc-PDCD1-17:1

Basic information

LNCipedia transcript ID: lnc-PDCD1-17:1 
LNCipedia gene ID: lnc-PDCD1-17
Location (hg38): chr2:242085179-242088565
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3387 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261186.1|ENCT00000255459.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.567 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1-17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC131097.4.1-4:5
5.0 lnc-AC131097.4.1-4:5
5.1 lnc-PDCD1-13:1
5.2 lnc-PDCD1-17:1