Transcript: lnc-PDCD1-17:4

Basic information

LNCipedia transcript ID: lnc-PDCD1-17:4 
LNCipedia gene ID: lnc-PDCD1-17
Location (hg38): chr2:242087361-242088463
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1103 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA834:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.0823 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1-17:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC131097.4.1-4:3
4.1 lnc-AC131097.4.1-4:3
5.0 lnc-AC131097.4.1-4:3
5.1 lnc-PDCD1-13:4
5.2 lnc-PDCD1-17:4