Transcript: lnc-PDCD1-17:5

Basic information

LNCipedia transcript ID: lnc-PDCD1-17:5 
LNCipedia gene ID: lnc-PDCD1-17
Location (hg38): chr2:242087354-242088457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1104 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567549.1; RP11-341N2.1-001; OTTHUMT00000431748.1; NONHSAT078032
Alternative gene names: ENSG00000261186.1; RP11-341N2.1; OTTHUMG00000176311.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.0823 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1-17:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC131097.4.1-4:1
4.0 lnc-AC131097.4.1-4:1
4.1 lnc-AC131097.4.1-4:1
5.0 lnc-AC131097.4.1-4:1
5.1 lnc-PDCD1-13:5
5.2 lnc-PDCD1-17:5