Transcript: lnc-PDCD1-17:6

Basic information

LNCipedia transcript ID: lnc-PDCD1-17:6 
LNCipedia gene ID: lnc-PDCD1-17
Ensembl Gene ID: ENSG00000261186
Ensembl Transcript ID: ENST00000567549
Location (hg38): chr2:242087351-242088457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1107 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567549.2
Alternative gene names: ENSG00000261186.2; RP11-341N2.1; LINC01238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.0823 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1-17:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC131097.4.1-4:4
4.1 lnc-AC131097.4.1-4:4
5.0 lnc-AC131097.4.1-4:4
5.1 lnc-PDCD1-13:6
5.2 lnc-PDCD1-17:6