Transcript: lnc-PDCD1-1:20

Basic information

LNCipedia transcript ID: lnc-PDCD1-1:20 
LNCipedia gene ID: lnc-PDCD1-1
Location (hg38): chr2:241894037-241902551
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 507 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000401641.2
Alternative gene names: ENSG00000216921.7; AC131097.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 147.8291 coding 
CPAT coding probability 53.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDCD1-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC131097.4.1-1:4
4.1 lnc-AC131097.4.1-1:4
5.0 lnc-AC131097.4.1-1:4
5.1 lnc-PDCD1-1:12
5.2 lnc-PDCD1-1:20