Transcript: lnc-PDCD11-1:1

Basic information

LNCipedia transcript ID: lnc-PDCD11-1:1 
LNCipedia gene ID: lnc-PDCD11-1
Ensembl Gene ID: ENSG00000234699
Ensembl Transcript ID: ENST00000411906
Location (hg38): chr10:103452846-103462695
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 657 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411906.1; RP11-225H22.4-001; OTTHUMT00000050166.1; NONHSAT016180
Alternative gene names: ENSG00000234699.1; RP11-225H22.4; OTTHUMG00000018992.1; AL139339.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.8973 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDCD11-1:1
4.0 lnc-PDCD11-1:1
4.1 lnc-PDCD11-1:1
5.0 lnc-PDCD11-1:1
5.1 lnc-SMC3-76:1
5.2 lnc-PDCD11-1:1