Transcript: lnc-PDCD1LG2-1:1

Basic information

LNCipedia transcript ID: lnc-PDCD1LG2-1:1 
LNCipedia gene ID: lnc-PDCD1LG2-1
Ensembl Gene ID: ENSG00000231509
Ensembl Transcript ID: ENST00000443792
Location (hg38): chr9:5584490-5588994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443792; ENST00000443792.1; RP11-574F11.3-001; OTTHUMT00000051630.1; NONHSAT130107
Alternative gene names: ENSG00000231509; RP11-574F11.3; ENSG00000231509.1; OTTHUMG00000019502.1; AL162253.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.769 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD1LG2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDCD1LG2-1:1
3.1 lnc-PDCD1LG2-1:1
4.0 lnc-PDCD1LG2-1:1
4.1 lnc-PDCD1LG2-1:1
5.0 lnc-PDCD1LG2-1:1
5.1 lnc-RECK-251:1
5.2 lnc-PDCD1LG2-1:1