Transcript: lnc-PDCD2-2:2

Basic information

LNCipedia transcript ID: lnc-PDCD2-2:2 
LNCipedia gene ID: lnc-PDCD2-2
Location (hg38): chr6:170736345-170737671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 221 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012841; NONHSAT116298
Alternative gene names: XLOC_005951; linc-PDCD2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.6935 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDCD2-2:2
3.1 lnc-PDCD2-2:2
4.0 lnc-PDCD2-2:2
4.1 lnc-PDCD2-2:2
5.0 lnc-PDCD2-2:2
5.1 lnc-PRKN-108:2
5.2 lnc-PDCD2-2:2