Transcript: lnc-PDE10A-2:4

Basic information

LNCipedia transcript ID: lnc-PDE10A-2:4 
LNCipedia gene ID: lnc-PDE10A-2
Location (hg38): chr6:165780269-165986496
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2044 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000535229; ENST00000535229.1; RP11-252P19.3-001; OTTHUMT00000432815.2; NONHSAT116011
Alternative gene names: ENSG00000256956; AL590482.2; ENSG00000256956.2; RP11-252P19.3; OTTHUMG00000176611.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 96.1509 coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDE10A-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDIM1-2:1
3.1 lnc-SDIM1-2:2
4.0 lnc-SDIM1-2:2
4.1 lnc-SDIM1-2:2
5.0 lnc-SDIM1-2:2
5.1 lnc-PRKN-35:2
5.2 lnc-PDE10A-2:4