Transcript: lnc-PDE4DIP-1:1

Basic information

LNCipedia transcript ID: lnc-PDE4DIP-1:1 
LNCipedia gene ID: lnc-PDE4DIP-1
Ensembl Gene ID: ENSG00000254539
Ensembl Transcript ID: ENST00000466343
Location (hg38): chr1:149048576-149051273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 869 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000466343.2; RP4-791M13.3-001; OTTHUMT00000384603.1; NONHSAT005842
Alternative gene names: ENSG00000254539.1; RP4-791M13.3; OTTHUMG00000165519.1; AC239804.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.4144 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE4DIP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDE4DIP-1:1
4.0 lnc-PDE4DIP-1:1
4.1 lnc-PDE4DIP-1:1
5.0 lnc-PDE4DIP-1:1
5.1 lnc-FCGR1A-10:1
5.2 lnc-PDE4DIP-1:1