Transcript: lnc-PDGFA-17:18

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:18 
LNCipedia gene ID: lnc-PDGFA-17
Location (hg38): chr7:148329-149438
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00013114; ENST00000487884; ENST00000487884.1; AC093627.9-004; OTTHUMT00000322491.1; NONHSAT118600
Alternative gene names: XLOC_006326; linc-VIPR2-4; ENSG00000242474; AC093627.9; ENSG00000242474.1; OTTHUMG00000151405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 41.1925 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-17:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-2:7
3.1 lnc-AC145676.2.1-4:7
4.0 lnc-AC145676.2.1-4:7
4.1 lnc-AC145676.2.1-4:7
5.0 lnc-AC145676.2.1-4:7
5.1 lnc-PRKAR1B-17:18
5.2 lnc-PDGFA-17:18