Transcript: lnc-PDGFA-17:19

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:19 
LNCipedia gene ID: lnc-PDGFA-17
Ensembl Gene ID: ENSG00000242474
Ensembl Transcript ID: ENST00000487884
Location (hg38): chr7:148232-149438
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000487884.2
Alternative gene names: ENSG00000242474.2; AC093627.9; AC093627.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 41.1925 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-17:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC145676.2.1-4:19
4.1 lnc-AC145676.2.1-4:19
5.0 lnc-AC145676.2.1-4:19
5.1 lnc-PRKAR1B-17:19
5.2 lnc-PDGFA-17:19