Transcript: lnc-PDGFA-17:27

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:27 
LNCipedia gene ID: lnc-PDGFA-17
Location (hg38): chr7:144643-148690
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 932 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013666; NONHSAT118589
Alternative gene names: XLOC_006326; linc-VIPR2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2264 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFA-17:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-2:11
3.1 lnc-AC145676.2.1-4:11
4.0 lnc-AC145676.2.1-4:11
4.1 lnc-AC145676.2.1-4:11
5.0 lnc-AC145676.2.1-4:11
5.1 lnc-PRKAR1B-17:27
5.2 lnc-PDGFA-17:27