Transcript: lnc-PDGFA-17:28

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:28 
LNCipedia gene ID: lnc-PDGFA-17
Ensembl Gene ID: ENSG00000242474
Ensembl Transcript ID: ENST00000480919
Location (hg38): chr7:144444-145430
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013112; ENST00000480919; ENST00000480919.1; AC093627.9-002; OTTHUMT00000322489.1; NONHSAT118588
Alternative gene names: XLOC_006326; linc-VIPR2-4; ENSG00000242474; AC093627.9; ENSG00000242474.1; OTTHUMG00000151405.1; ENSG00000242474.2; AC093627.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2264 non-coding 
CPAT coding probability 6.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFA-17:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-2:12
3.1 lnc-AC145676.2.1-4:12
4.0 lnc-AC145676.2.1-4:12
4.1 lnc-AC145676.2.1-4:12
5.0 lnc-AC145676.2.1-4:12
5.1 lnc-PRKAR1B-17:28
5.2 lnc-PDGFA-17:28