Transcript: lnc-PDGFA-17:5

Basic information

LNCipedia transcript ID: lnc-PDGFA-17:5 
LNCipedia gene ID: lnc-PDGFA-17
Location (hg38): chr7:145253-149488
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3526 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1252:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 56.2359 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-17:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC145676.2.1-4:17
4.1 lnc-AC145676.2.1-4:17
5.0 lnc-AC145676.2.1-4:17
5.1 lnc-PRKAR1B-17:5
5.2 lnc-PDGFA-17:5