Transcript: lnc-PDGFA-6:3

Basic information

LNCipedia transcript ID: lnc-PDGFA-6:3 
LNCipedia gene ID: lnc-PDGFA-6
Location (hg38): chr7:26392-35472
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 696 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013664; NONHSAT118563
Alternative gene names: XLOC_006324; linc-VIPR2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 50.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-4:2
3.1 lnc-AC145676.2.1-6:2
4.0 lnc-AC145676.2.1-6:2
4.1 lnc-AC145676.2.1-6:2
5.0 lnc-AC145676.2.1-6:2
5.1 lnc-PRKAR1B-26:3
5.2 lnc-PDGFA-6:3