Transcript: lnc-PDGFA-8:8

Basic information

LNCipedia transcript ID: lnc-PDGFA-8:8 
LNCipedia gene ID: lnc-PDGFA-8
Location (hg38): chr7:181484-182694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 364 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013671; NONHSAT118616
Alternative gene names: XLOC_006327; linc-VIPR2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.0232 non-coding 
CPAT coding probability 21.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFA-8:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-1:1
3.1 lnc-AC145676.2.1-2:1
4.0 lnc-AC145676.2.1-2:1
4.1 lnc-AC145676.2.1-8:8
5.0 lnc-AC145676.2.1-8:8
5.1 lnc-PRKAR1B-14:8
5.2 lnc-PDGFA-8:8