Transcript: lnc-PDGFD-1:15

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:15 
LNCipedia gene ID: lnc-PDGFD-1
Location (hg38): chr11:103699358-103700653
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 213 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019741; NONHSAT023920
Alternative gene names: XLOC_009535; linc-DCUN1D5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.9173 non-coding 
CPAT coding probability 4.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFD-3:1
3.1 lnc-PDGFD-3:1
4.0 lnc-PDGFD-3:1
4.1 lnc-PDGFD-1:15
5.0 lnc-PDGFD-1:15
5.1 lnc-DCUN1D5-8:15
5.2 lnc-PDGFD-1:15