Transcript: lnc-PDGFD-1:20

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:20 
LNCipedia gene ID: lnc-PDGFD-1
Location (hg38): chr11:103565576-103639070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019740; NONHSAT023918
Alternative gene names: XLOC_009534; linc-DCUN1D5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.7921 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFD-5:1
3.1 lnc-PDGFD-5:1
4.0 lnc-PDGFD-5:1
4.1 lnc-PDGFD-1:20
5.0 lnc-PDGFD-1:20
5.1 lnc-DCUN1D5-8:20
5.2 lnc-PDGFD-1:20