Transcript: lnc-PDGFD-1:5

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:5 
LNCipedia gene ID: lnc-PDGFD-1
Ensembl Gene ID: ENSG00000254987
Ensembl Transcript ID: ENST00000533459
Location (hg38): chr11:103675994-103895271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533459; ENST00000533459.1; RP11-563P16.1-001; OTTHUMT00000387230.1; NONHSAT023919
Alternative gene names: ENSG00000254987; RP11-563P16.1; ENSG00000254987.1; OTTHUMG00000165952.1; AP002989.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.1993 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFD-4:1
3.1 lnc-PDGFD-4:1
4.0 lnc-PDGFD-4:1
4.1 lnc-PDGFD-1:5
5.0 lnc-PDGFD-1:5
5.1 lnc-DCUN1D5-8:1
5.2 lnc-PDGFD-1:5

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