Transcript: lnc-PDGFD-1:7

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:7 
LNCipedia gene ID: lnc-PDGFD-1
Location (hg38): chr11:103838753-103849516
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4543 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000006805.1|HBMT00000256264.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.5749 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PDGFD-1:7
5.0 lnc-PDGFD-1:7
5.1 lnc-DCUN1D5-8:3
5.2 lnc-PDGFD-1:7