Transcript: lnc-PDGFD-1:9

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:9 
LNCipedia gene ID: lnc-PDGFD-1
Location (hg38): chr11:103784767-103849495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 287 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019742; NONHSAT023921
Alternative gene names: XLOC_009536; linc-DCUN1D5-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.9212 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFD-2:1
3.1 lnc-PDGFD-2:1
4.0 lnc-PDGFD-2:1
4.1 lnc-PDGFD-1:9
5.0 lnc-PDGFD-1:9
5.1 lnc-DCUN1D5-8:5
5.2 lnc-PDGFD-1:9