Transcript: lnc-PDGFRA-2:1

Basic information

LNCipedia transcript ID: lnc-PDGFRA-2:1 
LNCipedia gene ID: lnc-PDGFRA-2
Ensembl Gene ID: ENSG00000248518
Ensembl Transcript ID: ENST00000508241
Location (hg38): chr4:54376002-54376752
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007531; ENST00000508241; ENST00000508241.1; RP11-231C18.2-001; OTTHUMT00000361550.1; NONHSAT096420
Alternative gene names: XLOC_003540; linc-KIT-1; ENSG00000248518; RP11-231C18.2; ENSG00000248518.1; OTTHUMG00000160648.1; AC098587.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.2779 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFRA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFRA-2:1
3.1 lnc-PDGFRA-2:1
4.0 lnc-PDGFRA-2:1
4.1 lnc-PDGFRA-2:1
5.0 lnc-PDGFRA-2:1
5.1 lnc-CEP135-40:1
5.2 lnc-PDGFRA-2:1