Transcript: lnc-PDGFRL-1:1

Basic information

LNCipedia transcript ID: lnc-PDGFRL-1:1 
LNCipedia gene ID: lnc-PDGFRL-1
Ensembl Gene ID: ENSG00000253168
Ensembl Transcript ID: ENST00000517454
Location (hg38): chr8:17703988-17706187
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 735 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517454.1; RP11-326L2.1-001; OTTHUMT00000374849.1; NONHSAT125288
Alternative gene names: ENSG00000253168.1; RP11-326L2.1; OTTHUMG00000163704.1; AC124069.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.6106 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFRL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDGFRL-1:1
4.0 lnc-PDGFRL-1:1
4.1 lnc-PDGFRL-1:1
5.0 lnc-PDGFRL-1:1
5.1 lnc-PCM1-7:1
5.2 lnc-PDGFRL-1:1