Transcript: lnc-PDP2-3:2

Basic information

LNCipedia transcript ID: lnc-PDP2-3:2 
LNCipedia gene ID: lnc-PDP2-3
Location (hg38): chr16:66892937-66896997
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1555 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024437; NONHSAT143051
Alternative gene names: XLOC_011758; linc-CES2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8554 non-coding 
CPAT coding probability 79.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDP2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDP2-1:1
3.1 lnc-CA7-3:1
4.0 lnc-PDP2-3:2
4.1 lnc-PDP2-3:2
5.0 lnc-PDP2-3:2
5.1 lnc-NOL3-27:2
5.2 lnc-PDP2-3:2