Transcript: lnc-PDPK1-3:1

Basic information

LNCipedia transcript ID: lnc-PDPK1-3:1 
LNCipedia gene ID: lnc-PDPK1-3
RefSeq ID: NR_024492
Location (hg38): chr16:2638982-2646129
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7148 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT147812; NR_024492; NR_024492.1
Alternative gene names: FLJ42627


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.1532 non-coding 
CPAT coding probability 15.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDPK1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCTD5-1:2
4.0 lnc-PDPK1-3:1
4.1 lnc-PDPK1-3:1
5.0 lnc-PDPK1-3:1
5.1 lnc-CLDN9-18:1
5.2 lnc-PDPK1-3:1