Transcript: lnc-PDPK1-3:2

Basic information

LNCipedia transcript ID: lnc-PDPK1-3:2 
LNCipedia gene ID: lnc-PDPK1-3
Location (hg38): chr16:2640881-2646093
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5213 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1609:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.1532 non-coding 
CPAT coding probability 13.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDPK1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PDPK1-3:2
4.1 lnc-PDPK1-3:2
5.0 lnc-PDPK1-3:2
5.1 lnc-CLDN9-18:2
5.2 lnc-PDPK1-3:2