Transcript: lnc-PDZD2-1:2

Basic information

LNCipedia transcript ID: lnc-PDZD2-1:2 
LNCipedia gene ID: lnc-PDZD2-1
Location (hg38): chr5:32174321-32175427
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1107 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT100918
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.3579 non-coding 
CPAT coding probability 13.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD2-1:2
4.0 lnc-PDZD2-1:2
4.1 lnc-PDZD2-1:2
5.0 lnc-PDZD2-1:2
5.1 lnc-CARD6-117:3
5.2 lnc-PDZD2-1:2