Transcript: lnc-PDZD8-1:1

Basic information

LNCipedia transcript ID: lnc-PDZD8-1:1 
LNCipedia gene ID: lnc-PDZD8-1
Ensembl Gene ID: ENSG00000225936
Ensembl Transcript ID: ENST00000425264
Location (hg38): chr10:117239600-117241923
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 744 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425264.1; RP11-501J20.5-001; OTTHUMT00000050561.1; NONHSAT016513
Alternative gene names: ENSG00000225936.1; RP11-501J20.5; OTTHUMG00000019119.1; AL731557.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4302 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD8-1:1 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-1:1
4.0 lnc-PDZD8-1:1
4.1 lnc-PDZD8-1:1
5.0 lnc-PDZD8-1:1
5.1 lnc-NSMCE4A-84:6
5.2 lnc-PDZD8-1:1