Transcript: lnc-PEBP4-1:2

Basic information

LNCipedia transcript ID: lnc-PEBP4-1:2 
LNCipedia gene ID: lnc-PEBP4-1
Ensembl Gene ID: ENSG00000245025
Ensembl Transcript ID: ENST00000523884
Location (hg38): chr8:22984596-23007531
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 471 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523884; ENST00000523884.1; RP11-875O11.1-002; OTTHUMT00000375234.1; NONHSAT125523
Alternative gene names: ENSG00000245025; RP11-875O11.1; ENSG00000245025.2; OTTHUMG00000163755.1; AC107959.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 152.2694 coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PEBP4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFRSF10B-1:2
3.1 lnc-PEBP4-1:2
4.0 lnc-PEBP4-1:2
4.1 lnc-PEBP4-1:2
5.0 lnc-PEBP4-1:2
5.1 lnc-PEBP4-1:2
5.2 lnc-PEBP4-1:2