Transcript: lnc-PELI1-1:1

Basic information

LNCipedia transcript ID: lnc-PELI1-1:1 
LNCipedia gene ID: lnc-PELI1-1
Location (hg38): chr2:64086350-64088246
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00003301; ENST00000423539; ENST00000423539.1; AC012368.1-001; OTTHUMT00000327083.1; NONHSAT071085
Alternative gene names: XLOC_002122; linc-VPS54; ENSG00000228079; AC012368.1; ENSG00000228079.1; OTTHUMG00000152631.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.7733 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PELI1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PELI1-1:1
3.1 lnc-PELI1-1:1
4.0 lnc-PELI1-1:1
4.1 lnc-PELI1-1:1
5.0 lnc-PELI1-1:1
5.1 lnc-GKN2-120:1
5.2 lnc-PELI1-1:1