Transcript: lnc-PELI1-5:1

Basic information

LNCipedia transcript ID: lnc-PELI1-5:1 
LNCipedia gene ID: lnc-PELI1-5
Ensembl Gene ID: ENSG00000238201
Ensembl Transcript ID: ENST00000424119
Location (hg38): chr2:64338067-64341647
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003303; ENST00000424119; ENST00000424119.1; AC114752.3-001; OTTHUMT00000327291.1; NONHSAT071110
Alternative gene names: XLOC_002125; linc-PELI1-4; ENSG00000238201; AC114752.3; ENSG00000238201.1; OTTHUMG00000152672.1; AC114752.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.0807 non-coding 
CPAT coding probability 13.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PELI1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PELI1-5:1
3.1 lnc-PELI1-5:1
4.0 lnc-PELI1-5:1
4.1 lnc-PELI1-5:1
5.0 lnc-PELI1-5:1
5.1 lnc-GKN2-110:1
5.2 lnc-PELI1-5:1