Transcript: lnc-PERP-1:1

Basic information

LNCipedia transcript ID: lnc-PERP-1:1 
LNCipedia gene ID: lnc-PERP-1
Ensembl Gene ID: ENSG00000226004
Ensembl Transcript ID: ENST00000417932
Location (hg38): chr6:137943079-137945802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011573; ENST00000417932; ENST00000417932.1; RP11-10J5.1-001; OTTHUMT00000042419.1; NONHSAT115194
Alternative gene names: XLOC_005851; linc-OLIG3-5; ENSG00000226004; RP11-10J5.1; ENSG00000226004.1; OTTHUMG00000015665.1; AL591468.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.314 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PERP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PERP-1:1
3.1 lnc-PERP-1:1
4.0 lnc-PERP-1:1
4.1 lnc-PERP-1:1
5.0 lnc-PERP-1:1
5.1 lnc-OLIG3-12:6
5.2 lnc-PERP-1:1