Transcript: lnc-PERP-2:1

Basic information

LNCipedia transcript ID: lnc-PERP-2:1 
LNCipedia gene ID: lnc-PERP-2
Ensembl Gene ID: ENSG00000237499
Ensembl Transcript ID: ENST00000448942
Location (hg38): chr6:137857286-137867704
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 963 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448942; ENST00000448942.1; RP11-356I2.4-001; OTTHUMT00000042412.1; NONHSAT115187; ENST00000448942.5
Alternative gene names: ENSG00000237499; RP11-356I2.4; ENSG00000237499.1; OTTHUMG00000015663.1; ENSG00000237499.2; ENSG00000237499.6; AL357060.2; AL357060.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.3149 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PERP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PERP-2:1
3.1 lnc-PERP-2:1
4.0 lnc-PERP-2:1
4.1 lnc-PERP-2:1
5.0 lnc-PERP-2:1
5.1 lnc-OLIG3-2:24
5.2 lnc-PERP-2:1