Transcript: lnc-PERP-2:9

Basic information

LNCipedia transcript ID: lnc-PERP-2:9 
LNCipedia gene ID: lnc-PERP-2
Ensembl Gene ID: ENSG00000237499
Ensembl Transcript ID: ENST00000440578
Location (hg38): chr6:137823673-137825894
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1025 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440578; TCONS_00011571; ENST00000440578.1; RP11-356I2.2-001; OTTHUMT00000042411.1; NONHSAT115183
Alternative gene names: ENSG00000235842; XLOC_005849; linc-OLIG3-1; RP11-356I2.2; ENSG00000235842.1; OTTHUMG00000015662.1; ENSG00000237499.2; RP11-356I2.4; ENSG00000237499.6; AL357060.2; AL357060.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.6452 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PERP-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PERP-3:2
3.1 lnc-PERP-3:2
4.0 lnc-PERP-2:9
4.1 lnc-PERP-2:9
5.0 lnc-PERP-2:9
5.1 lnc-OLIG3-2:42
5.2 lnc-PERP-2:9