Transcript: lnc-PEX3-1:5

Basic information

LNCipedia transcript ID: lnc-PEX3-1:5 
LNCipedia gene ID: lnc-PEX3-1
Location (hg38): chr6:143490705-143506102
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 752 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT115349; ENST00000589563.1
Alternative gene names: ENSG00000229036.3; RP1-20N2.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.3057 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PEX3-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PEX3-1:5
4.0 lnc-PEX3-1:5
4.1 lnc-PEX3-1:5
5.0 lnc-PEX3-1:5
5.1 lnc-ADGRG6-15:4
5.2 lnc-PEX3-1:5