Transcript: lnc-PEX5-1:1

Basic information

LNCipedia transcript ID: lnc-PEX5-1:1 
LNCipedia gene ID: lnc-PEX5-1
Location (hg38): chr12:7230105-7233185
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_590_chr12:7382700-7385781_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.495 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PEX5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PEX5-1:1
4.0 lnc-PEX5-1:1
4.1 lnc-PEX5-1:1
5.0 lnc-PEX5-1:1
5.1 lnc-CLEC4D-25:1
5.2 lnc-PEX5-1:1