Transcript: lnc-PFKFB3-453:1

Basic information

LNCipedia transcript ID: lnc-PFKFB3-453:1 
LNCipedia gene ID: lnc-PFKFB3-453
Ensembl Gene ID: ENSG00000215244
Ensembl Transcript ID: ENST00000399868
Location (hg38): chr10:6277687-6335982
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3086 bp
Exons: 7
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399868.2
Alternative gene names: ENSG00000215244.2; RP11-563J2.2; AL137145.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0549 non-coding 
CPAT coding probability 49.70% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PFKFB3-453:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL137145.1-1:4
4.0 lnc-AL137145.2-1:2
4.1 lnc-AL137145.2-1:2
5.0 lnc-AL137145.2-1:2
5.1 lnc-NPY4R2-453:1
5.2 lnc-PFKFB3-453:1