Transcript: lnc-PFKP-10:1

Basic information

LNCipedia transcript ID: lnc-PFKP-10:1 
LNCipedia gene ID: lnc-PFKP-10
Ensembl Gene ID: ENSG00000237500
Ensembl Transcript ID: ENST00000431209
Location (hg38): chr10:2499721-2500570
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017759; ENST00000431209; ENST00000431209.1; RP11-526P5.1-001; OTTHUMT00000046445.1; NONHSAT010978
Alternative gene names: XLOC_008341; linc-PFKP-4; ENSG00000237500; RP11-526P5.1; ENSG00000237500.1; OTTHUMG00000017550.1; AL713851.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.1056 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-9:1
3.1 lnc-PFKP-10:1
4.0 lnc-PFKP-10:1
4.1 lnc-PFKP-10:1
5.0 lnc-PFKP-10:1
5.1 lnc-NPY4R2-538:1
5.2 lnc-PFKP-10:1