Transcript: lnc-PFKP-13:1

Basic information

LNCipedia transcript ID: lnc-PFKP-13:1 
LNCipedia gene ID: lnc-PFKP-13
Ensembl Gene ID: ENSG00000228353
Ensembl Transcript ID: ENST00000415358
Location (hg38): chr10:3767915-3768751
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 313 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017769; ENST00000415358.1; RP11-184A2.2-001; OTTHUMT00000046493.1; NONHSAT011052
Alternative gene names: XLOC_008353; linc-AKR1E2-10; ENSG00000228353.1; RP11-184A2.2; OTTHUMG00000017565.1; AL450322.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.824 non-coding 
CPAT coding probability 22.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-12:1
3.1 lnc-PFKP-13:1
4.0 lnc-PFKP-13:1
4.1 lnc-PFKP-13:1
5.0 lnc-PFKP-13:1
5.1 lnc-NPY4R2-513:1
5.2 lnc-PFKP-13:1