Transcript: lnc-PFKP-17:1

Basic information

LNCipedia transcript ID: lnc-PFKP-17:1 
LNCipedia gene ID: lnc-PFKP-17
Ensembl Gene ID: ENSG00000227912
Ensembl Transcript ID: ENST00000421077
Location (hg38): chr10:2166332-2169460
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2321 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017758; ENST00000421077; ENST00000421077.1; RP11-69C17.3-001; OTTHUMT00000046435.1; NONHSAT010954
Alternative gene names: XLOC_008340; linc-PFKP-5; ENSG00000227912; RP11-69C17.3; ENSG00000227912.1; OTTHUMG00000017545.1; AL441943.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.533 non-coding 
CPAT coding probability 32.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-16:1
3.1 lnc-PFKP-17:1
4.0 lnc-PFKP-17:1
4.1 lnc-PFKP-17:1
5.0 lnc-PFKP-17:1
5.1 lnc-NPY4R2-541:1
5.2 lnc-PFKP-17:1