Transcript: lnc-PFKP-38:3

Basic information

LNCipedia transcript ID: lnc-PFKP-38:3 
LNCipedia gene ID: lnc-PFKP-38
Location (hg38): chr10:3805489-3816769
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5659 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000103067.1|MICT00000035908.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.0506 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-38:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PFKP-38:3
5.0 lnc-PFKP-38:3
5.1 lnc-NPY4R2-510:3
5.2 lnc-PFKP-38:3