Transcript: lnc-PFKP-42:1

Basic information

LNCipedia transcript ID: lnc-PFKP-42:1 
LNCipedia gene ID: lnc-PFKP-42
Location (hg38): chr10:3143015-3162388
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 453 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000452662.1; RP11-298E9.3-001; OTTHUMT00000046473.1; NONHSAT011007
Alternative gene names: ENSG00000237399.1; RP11-298E9.3; OTTHUMG00000017558.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.4719 non-coding 
CPAT coding probability 38.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PFKP-42:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PFKP-1:2
4.0 PITRM1-AS1:7
4.1 PITRM1-AS1:7
5.0 PITRM1-AS1:7
5.1 lnc-NPY4R2-568:1
5.2 lnc-PFKP-42:1