Transcript: lnc-PFKP-6:1

Basic information

LNCipedia transcript ID: lnc-PFKP-6:1 
LNCipedia gene ID: lnc-PFKP-6
Ensembl Gene ID: ENSG00000227338
Ensembl Transcript ID: ENST00000436340
Location (hg38): chr10:3266003-3267015
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 463 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017767; ENST00000436340; ENST00000436340.1; RP11-195B3.1-001; OTTHUMT00000046489.1; NONHSAT011019
Alternative gene names: XLOC_008348; linc-AKR1E2-15; ENSG00000227338; RP11-195B3.1; ENSG00000227338.1; OTTHUMG00000017562.1; AL139280.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.965 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-5:1
3.1 lnc-PFKP-6:1
4.0 lnc-PFKP-6:1
4.1 lnc-PFKP-6:1
5.0 lnc-PFKP-6:1
5.1 lnc-NPY4R2-523:2
5.2 lnc-PFKP-6:1